The place classical epidemiology has confirmed to be insufficient for surveillance and management of foodborne pathogens, molecular epidemiology, utilizing genomic typing strategies, can add worth. Nevertheless, the evaluation of entire genome sequencing (WGS) information varies extensively and isn’t but absolutely harmonised. We used genomic information on 494 Listeria monocytogenes isolates from ready-to-eat meals merchandise and meals processing environments deposited within the pressure assortment of the German Nationwide Reference Laboratory to check varied procedures for WGS information evaluation and to judge compatibility of outcomes.
Two totally different core genome multilocus sequence typing (cgMLST) schemes, totally different reference genomes in single nucleotide polymorphism (SNP) evaluation and business in addition to open-source software program have been in contrast. Correlation of allele distances from the totally different cgMLST approaches was excessive, starting from 0.97 to 1, and unified thresholds yielded greater clustering concordance than scheme-specific thresholds. The variety of detected SNP variations might be elevated as much as an element of three.9 utilizing a selected reference genome in contrast with a normal one. Moreover, particular reference genomes improved comparability of SNP evaluation outcomes obtained utilizing totally different software program instruments. The usage of a closed or a draft particular reference genome didn’t make a distinction.
The harmonisation of WGS information evaluation will lastly assure seamless information alternate, however, within the meantime, data on threshold values that result in comparable clustering of isolates by totally different strategies might enhance communication between laboratories. We subsequently established a translation code between generally utilized cgMLST and SNP strategies primarily based on optimised clustering concordances. This code can work as a primary filter to establish WGS-based typing matches ensuing from totally different strategies, which opens up a brand new perspective for information alternate and thereby accelerates time-critical analyses, equivalent to in outbreak investigations.
Antibacterial and Antifungal Properties of Composite Polyethylene Supplies Bolstered with Neem and Turmeric
An Autism-Related Mutation Impairs Neuroligin-Four Glycosylation and Enhances Excitatory Synaptic Transmission in Human Neurons
Casein, for Molecular Biology |
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MB279-100G | EWC Diagnostics | 1 unit | EUR 110.77 |
Description: Casein, for Molecular Biology |
Casein, for Molecular Biology |
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MB279-500G | EWC Diagnostics | 1 unit | EUR 387.65 |
Description: Casein, for Molecular Biology |
Urea, suitable for molecular biology |
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GE1210-1 | Glentham Life Sciences | 1 | EUR 58 |
Urea, suitable for molecular biology |
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GE1210-1KG | Glentham Life Sciences | 1 kg | EUR 106.8 |
Urea, suitable for molecular biology |
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GE1210-500 | Glentham Life Sciences | 500 | EUR 33.1 |
Urea, suitable for molecular biology |
|||
GE1210-500G | Glentham Life Sciences | 500 g | EUR 76.8 |
2-Mercaptoethanol ?For Molecular Biology |
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MB041-100ML | EWC Diagnostics | 1 unit | EUR 9.02 |
Description: 2-Mercaptoethanol ?For Molecular Biology |
2-Mercaptoethanol ?For Molecular Biology |
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MB041-500ML | EWC Diagnostics | 1 unit | EUR 26.47 |
Description: 2-Mercaptoethanol ?For Molecular Biology |
RNase/DNase free water, for molecular biology (10 x 1.5ml) |
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Z-RNase/DNase-free-water | Novacyt Group | n/a | EUR 62 |
Sodium chloride, suitable for molecular biology |
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GE0307-1 | Glentham Life Sciences | 1 | EUR 45.2 |
Sucrose, GlenBiol, suitable for molecular biology |
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GC3201-1KG | Glentham Life Sciences | 1 kg | EUR 90 |
Molecular Biology Grade Water for RT-PCR |
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ML065-1.5ML | EWC Diagnostics | 1 unit | EUR 7.82 |
Description: Molecular Biology Grade Water for RT-PCR |
Tris (Molecular Biology Grade) |
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CE237 | GeneOn | 500 g | EUR 106.8 |
Tris (Molecular Biology Grade) |
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CE238 | GeneOn | 1 kg | EUR 153.6 |
Tris (Molecular Biology Grade) |
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CE239 | GeneOn | 5 kg | EUR 535.2 |
Pyridine, GlenBiol™, suitable for molecular biology with molecular sieve |
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GS8780-2500 | Glentham Life Sciences | 2500 | EUR 249.8 |
Sucrose, GlenBiol™, suitable for molecular biology |
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GC3201-1 | Glentham Life Sciences | 1 | EUR 45.1 |
Formamide, GlenBiol™, suitable for molecular biology |
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GS9663-100 | Glentham Life Sciences | 100 | EUR 48.9 |
Pyridine, GlenBiol™, suitable for molecular biology |
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GS6659-2500 | Glentham Life Sciences | 2500 | EUR 240.3 |
Pyridine, GlenBiol™, suitable for molecular biology |
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GS6659-500 | Glentham Life Sciences | 500 | EUR 95.8 |
Dimethylformamide, GlenBiol™, suitable for molecular biology with molecular sieve |
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GS3406-2500 | Glentham Life Sciences | 2500 | EUR 116.2 |
Agarose, low EEO, GlenBiol, suitable for molecular biology |
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GE6258-100G | Glentham Life Sciences | 100 g | EUR 217.2 |
DTT (Molecular Biology Grade) |
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CE131 | GeneOn | 5 g | EUR 93.6 |
DTT (Molecular Biology Grade) |
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CE132 | GeneOn | 10 g | EUR 133.2 |
DTT (Molecular Biology Grade) |
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CE133 | GeneOn | 25 g | EUR 243.6 |
NAD (Molecular Biology Grade) |
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CE196 | GeneOn | 1 g | EUR 72 |
NAD (Molecular Biology Grade) |
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CE197 | GeneOn | 5 g | EUR 165.6 |
NBT (Molecular Biology Grade) |
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CE209 | GeneOn | 1 g | EUR 123.6 |
NBT (Molecular Biology Grade) |
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CE210 | GeneOn | 5 g | EUR 360 |
Dimethylformamide, GlenBiol™, suitable for molecular biology |
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GS6580-2500 | Glentham Life Sciences | 2500 | EUR 107.3 |
DMSO, Molecular Biology Grade |
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40470006-1 | Glycomatrix | 100 mL | EUR 88.18 |
DMSO, Molecular Biology Grade |
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40470006-2 | Glycomatrix | 250 mL | EUR 150.19 |
DMSO, Molecular Biology Grade |
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40470006-3 | Glycomatrix | 500 mL | EUR 279.26 |
EGTA, Molecular Biology Grade |
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40500028-2 | Glycomatrix | 50 g | EUR 106.43 |
EGTA, Molecular Biology Grade |
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40500028-3 | Glycomatrix | 100 g | EUR 177.58 |
EGTA, Molecular Biology Grade |
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40500028-4 | Glycomatrix | 500 g | EUR 603.19 |
EGTA, Molecular Biology Grade |
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40500028-5 | Glycomatrix | 1 kg | EUR 912.98 |
EGTA, Molecular Biology Grade |
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40500028-6 | Glycomatrix | 2 kg | EUR 1687.94 |
BCIP (Molecular Biology Grade) |
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CE108 | GeneOn | 250 mg | EUR 75.6 |
BCIP (Molecular Biology Grade) |
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CE109 | GeneOn | 1 g | EUR 108 |
DAPI (Molecular Biology Grade) |
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CE117 | GeneOn | 5 mg | EUR 72 |
DAPI (Molecular Biology Grade) |
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CE118 | GeneOn | 25 mg | EUR 159.6 |
DAPI (Molecular Biology Grade) |
|||
CE119 | GeneOn | 100 mg | EUR 382.8 |
Water, distilled, GlenBiol™, suitable for molecular biology |
|||
GK8512-1 | Glentham Life Sciences | 1 | EUR 60.1 |
Water, distilled, GlenBiol™, suitable for molecular biology |
|||
GK8512-1L | Glentham Life Sciences | 1 l | EUR 92.4 |
Acetonitrile 50, GlenBiol™, suitable for molecular biology |
|||
GS0247-1 | Glentham Life Sciences | 1 | EUR 40.7 |
Acetonitrile 50, GlenBiol™, suitable for molecular biology |
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GS0247-2500 | Glentham Life Sciences | 2500 | EUR 61.3 |
Acetonitrile 10, GlenBiol™, suitable for molecular biology |
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GS0969-1 | Glentham Life Sciences | 1 | EUR 47 |
Acetonitrile 10, GlenBiol™, suitable for molecular biology |
|||
GS0969-2500 | Glentham Life Sciences | 2500 | EUR 73.9 |
Acetonitrile 30, GlenBiol™, suitable for molecular biology |
|||
GS8649-1 | Glentham Life Sciences | 1 | EUR 43.1 |
Acetonitrile 30, GlenBiol™, suitable for molecular biology |
|||
GS8649-2500 | Glentham Life Sciences | 2500 | EUR 66.5 |
CHAPS (Molecular Biology Grade) |
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CE114 | GeneOn | 1 g | EUR 66 |
CHAPS (Molecular Biology Grade) |
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CE115 | GeneOn | 5 g | EUR 157.2 |
CHAPS (Molecular Biology Grade) |
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CE116 | GeneOn | 25 g | EUR 492 |
HEPES (Molecular Biology Grade) |
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CE171 | GeneOn | 100 g | EUR 98.4 |
HEPES (Molecular Biology Grade) |
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CE172 | GeneOn | 500 g | EUR 268.8 |
HEPES (Molecular Biology Grade) |
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CE173 | GeneOn | 1 kg | EUR 424.8 |
Water (Molecular Biology Grade) |
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CE243 | GeneOn | 500 ml | EUR 62.4 |
Water (Molecular Biology Grade) |
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CE244 | GeneOn | 1 l | EUR 67.2 |
Molecular Biology Grade Water |
|||
ML024-100ML | EWC Diagnostics | 1 unit | EUR 3.54 |
Description: Molecular Biology Grade Water |
Molecular Biology Grade Water |
|||
ML024-10X100ML | EWC Diagnostics | 1 unit | EUR 29.52 |
Description: Molecular Biology Grade Water |
Molecular Biology Grade Water |
|||
ML024-10X500ML | EWC Diagnostics | 1 unit | EUR 87.91 |
Description: Molecular Biology Grade Water |
Molecular Biology Grade Water |
|||
ML024-500ML | EWC Diagnostics | 1 unit | EUR 12.56 |
Description: Molecular Biology Grade Water |
Molecular Biology Grade Water |
|||
ML064-100ML | EWC Diagnostics | 1 unit | EUR 3.67 |
Description: Molecular Biology Grade Water |
Molecular Biology Grade Water |
|||
ML064-10X100ML | EWC Diagnostics | 1 unit | EUR 25.38 |
Description: Molecular Biology Grade Water |
Molecular Biology Grade Water |
|||
ML064-500ML | EWC Diagnostics | 1 unit | EUR 10.81 |
Description: Molecular Biology Grade Water |
Phenol, (Carbolic acid) Double distilled for Molecular Biology |
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PD0252 | Bio Basic | 500g | EUR 192.59 |
Ammonia solution, GlenBiol™, suitable for molecular biology |
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GS8853-100 | Glentham Life Sciences | 100 | EUR 91.2 |
Formamide deionized (Molecular Biology Grade) |
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CE145 | GeneOn | 500 ml | EUR 87.6 |
Formamide deionized (Molecular Biology Grade) |
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CE146 | GeneOn | 1 l | EUR 120 |
Agarose, low EEO, GlenBiol™, suitable for molecular biology |
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GE6258-100 | Glentham Life Sciences | 100 | EUR 150.4 |
Agarose, low EEO, GlenBiol™, suitable for molecular biology |
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GE6258-25 | Glentham Life Sciences | 25 | EUR 60.1 |
Agarose, Molecular Biology Grade |
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40100164-1 | Bio-WORLD | 25 g | Ask for price |
Agarose, Molecular Biology Grade |
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40100164-2 | Bio-WORLD | 50 g | Ask for price |
Agarose, Molecular Biology Grade |
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40100164-3 | Bio-WORLD | 100 g | Ask for price |
Agarose, Molecular Biology Grade |
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40100164-4 | Bio-WORLD | 500 g | Ask for price |
Agarose, Molecular Biology Grade |
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40100164-5 | Bio-WORLD | 1 kg | Ask for price |
Glycine (Molecular Biology Grade) |
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CE158 | GeneOn | 1 kg | EUR 84 |
Glycine (Molecular Biology Grade) |
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CE159 | GeneOn | 5 kg | EUR 228 |
Tween20 (Molecular Biology Grade) |
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CE242 | GeneOn | 1 l | EUR 106.8 |
Agarose (Molecular Biology Grade) |
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abx299715-100g | Abbexa | 100 µg | Ask for price |
Agarose (Molecular Biology Grade) |
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abx299715-20g | Abbexa | 20 µg | EUR 525 |
Agarose (Molecular Biology Grade) |
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abx299715-50g | Abbexa | 50 µg | Ask for price |
Lysozyme (Molecular Biology Grade) |
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CE188 | GeneOn | 1 g | EUR 70.8 |
Lysozyme (Molecular Biology Grade) |
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CE189 | GeneOn | 10 g | EUR 247.2 |
Lysozyme (Molecular Biology Grade) |
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CE189L | GeneOn | 50 g | EUR 310 |
Lysozyme (Molecular Biology Grade) |
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CE189XL | GeneOn | 250 g | EUR 1050 |
TRIS-Glycine Buffer 10X, GlenBiol™, suitable for molecular biology |
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GE6710-1 | Glentham Life Sciences | 1 | EUR 67.9 |
TRIS-Glycine Buffer 10X, GlenBiol™, suitable for molecular biology |
|||
GE6710-250 | Glentham Life Sciences | 250 | EUR 22.7 |
OORA00229-1L - Molecular Biology Grade UltraPure Water |
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OORA00229-1L | Aviva Systems Biology | 1L | EUR 149 |
OORA00230-1L - Molecular Biology Grade UltraPure Water |
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OORA00230-1L | Aviva Systems Biology | 1L | EUR 279 |
Tris-EDTA buffer solution (10X, suitable for molecular biology, pH 8.0) |
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GX7489-1 | Glentham Life Sciences | 1 | EUR 22.7 |
Tris-EDTA buffer solution (10X, suitable for molecular biology, pH 8.0) |
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GX7489-2500 | Glentham Life Sciences | 2500 | EUR 45.2 |
Tris-EDTA buffer solution (10X, suitable for molecular biology, pH 8.0) |
|||
GX7489-500 | Glentham Life Sciences | 500 | EUR 15.9 |
"10X PBS, Molecular Biology Grade" |
|||
ML023-100ML | EWC Diagnostics | 1 unit | EUR 17.65 |
Description: "10X PBS, Molecular Biology Grade" |
10X PBS, Molecular Biology Grade |
|||
ML023-500ML | EWC Diagnostics | 1 unit | EUR 38.97 |
Description: 10X PBS, Molecular Biology Grade |
"10X TBS, Molecular Biology Grade" |
|||
ML029-100ML | EWC Diagnostics | 1 unit | EUR 19.04 |
Description: "10X TBS, Molecular Biology Grade" |
"10X TBS, Molecular Biology Grade" |
|||
ML029-500ML | EWC Diagnostics | 1 unit | EUR 40.48 |
Description: "10X TBS, Molecular Biology Grade" |
10X TBS, Molecular Biology Grade |
|||
ML029-6X500ML | EWC Diagnostics | 1 unit | EUR 138.56 |
Description: 10X TBS, Molecular Biology Grade |
Tris - Hydrochloride (Molecular Biology Grade) |
|||
CE234 | GeneOn | 250 g | EUR 99.6 |
Tris - Hydrochloride (Molecular Biology Grade) |
|||
CE235 | GeneOn | 500 g | EUR 144 |
Tris - Hydrochloride (Molecular Biology Grade) |
|||
CE236 | GeneOn | 1 kg | EUR 223.2 |
OORA00218-100IU - DNA Ligase T4 Molecular Biology Grade |
|||
OORA00218-100IU | Aviva Systems Biology | 100Units | EUR 129 |
Tween 20, Molecular Biology Grade |
|||
T9100-010 | GenDepot | 100ml | EUR 86.4 |
Tween 20, Molecular Biology Grade |
|||
T9100-050 | GenDepot | 500ml | EUR 133.2 |
Tween 20, Molecular Biology Grade |
|||
T9100-100 | GenDepot | 1L | EUR 160.8 |
100mL Molecular Biology Grade - PK6 |
|||
46-000-CI | Scientific Laboratory Supplies | PK6 | EUR 83.7 |
500mL Molecular Biology Grade - PK6 |
|||
46-000-CV | Scientific Laboratory Supplies | PK6 | EUR 155.25 |
Agarose LE, Ultra-Pure Molecular Biology Grade, 100 g |
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41028-100G | Biotium | 100G | EUR 201 |
Description: N/A |
Agarose LE, Ultra-Pure Molecular Biology Grade, 100 g |
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41028-100G-1 | Biotium | EA | EUR 201 |
Boric Acid, Molecular Biology Grade |
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40200060-1 | Glycomatrix | 500 g | EUR 46.16 |
Boric Acid, Molecular Biology Grade |
|||
40200060-2 | Glycomatrix | 1 kg | EUR 76.66 |
Boric Acid, Molecular Biology Grade |
|||
40200060-3 | Glycomatrix | 2.5 kg | EUR 145.5 |
D(+)-Sucrose (Molecular Biology Grade) |
|||
CE224 | GeneOn | 500 g | EUR 67.2 |
D(+)-Sucrose (Molecular Biology Grade) |
|||
CE225 | GeneOn | 1 kg | EUR 84 |
D(+)-Sucrose (Molecular Biology Grade) |
|||
CE226 | GeneOn | 5 kg | EUR 207.6 |
20xSSC, Molecular Biology Grade, pH7.0 |
|||
TBS5033-1L | Tribioscience | 1L | EUR 67 |
OORA00218-100UNITS - DNA Ligase T4 Molecular Biology Grade |
|||
OORA00218-100UNITS | Aviva Systems Biology | 100Units | EUR 149 |
Glycerol 87 % (Molecular Biology Grade) |
|||
CE154 | GeneOn | 1 l | EUR 93.6 |
MOPS buffer (Molecular Biology Grade) |
|||
CE194 | GeneOn | 100 g | EUR 102 |
MOPS buffer (Molecular Biology Grade) |
|||
CE195 | GeneOn | 250 g | EUR 169.2 |
Agarose, Molecular Biology Grade, 100g |
|||
PC0701-100g | Vivantis | each | Ask for price |
Agarose, Molecular Biology Grade, 1kg |
|||
PC0701-1kg | Vivantis | each | Ask for price |
Agarose, Molecular Biology Grade, 500g |
|||
PC0701-500g | Vivantis | each | Ask for price |
TRIS-Glycine-SDS Buffer 10X, GlenBiol™, suitable for molecular biology |
|||
GE9118-1 | Glentham Life Sciences | 1 | EUR 75.3 |
TRIS-Glycine-SDS Buffer 10X, GlenBiol™, suitable for molecular biology |
|||
GE9118-250 | Glentham Life Sciences | 250 | EUR 30.1 |
Dimethylsulfoxide (Molecular Biology Grade) |
|||
CE120 | GeneOn | 100 ml | EUR 66 |
Dimethylsulfoxide (Molecular Biology Grade) |
|||
CE121 | GeneOn | 500 ml | EUR 110.4 |
3-Methylbutan-1-ol, GlenBiol™, suitable for molecular biology |
|||
GS6015-100 | Glentham Life Sciences | 100 | EUR 74.5 |
3-Methylbutan-1-ol, GlenBiol™, suitable for molecular biology |
|||
GS6015-500 | Glentham Life Sciences | 500 | EUR 301.4 |
OORA00219-v1 - DNA Ligase T4 Molecular Biology Grade (500units) |
|||
OORA00219-v1 | Aviva Systems Biology | 500units | EUR 375 |
Di-iso-propylethylamine, GlenBiol™, suitable for molecular biology |
|||
GS7181-100 | Glentham Life Sciences | 100 | EUR 143.3 |